Publications

2021

  • Egfjord, A. F.-H., Margaryan, A., Fischer, A., Sjögren, K.-G., Price, T. D., Johannsen, N. N., . . . Allentoft M. E. (2021). Genomic Steppe ancestry in skeletons from the Neolithic Single Grave Culture in Denmark. PLoS One, 16(1), e0244872.
  • Mousavi-Derazmahalleh, M., Stott ,A., Lines, R., Peverley, G., Nester, G., Simpson, T., Zawierta, M., De La Pierre, M., Bunce, M., Christophersen, C. T. (2021). eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA (eDNA) sequences exploiting Nextflow and Singularity. Molecular Ecology Resources, in press.
  • Saccò, M., Blyth, A.J., Humphreys, Cooper, S.J., White, N.E., Campbell, M., Mousavi-Derazmahalleh, M., Hua, Q., Mazumder, D., Smith, C., Griebler, C. and Grice, K. 2021. Rainfall as a trigger of ecological cascade effects in an Australian groundwater ecosystem. Scientific Reports, in press.
  • Seersholm, F., Lykke Hansen, K., Heydenrych, M., Hansen, A. J., Bunce, M., Allentoft, M. E. (2021). Ancient DNA preserved in small bone fragments from the P.W. Lund collection. Ecology and Evolution, https://doi.org/10.1002/ece3.7162.
  • Shafaei, A., Rees, J., Christophersen, C.T., Devine, A., Broadhurst, D., and Boyce, M.C. (2021). Extraction and quantitative determination of bile acids in feces. Analytica Chimica Acta, 1150. DOI: 10.1016/j.aca.2021.338224

2020

  • Adams, L.A., Wang, Z., Liddle, C., Melton, P.E., Ariff, A., Chandraratna, H., Tan, J., Ching, H., Coulter, S., de Boer, B., Christophersen, C.T., O’Sullivan, T.A., Morrison, M. and Jeffrey, G.P. (2020). Bile acids associate with specific gut microbiota, low level alcohol consumption and liver fibrosis in patients with non-alcoholic fatty liver disease. Liver International. 40(6), 1356-1365. DOI: http://dx.doi.org/10.1111/liv.14453
  • Ball, J. W., Robinson, T. P., Wardell-Johnson, G. W., Bovill, J., Byrne, M., & Nevill, P. G. (2020). Fine-scale species distribution modelling and genotyping by sequencing to examine hybridisation between two narrow endemic plant species. Scientific reports, 10(1), 1-12.
  • Beger, M., Wendt, H., Sullivan, J., Mason, C., LeGrand, J., Davey, K., . . . Fernandes, L. (2020). National-scale marine bioregions for the Southwest Pacific. Marine Pollution Bulletin, 150, 110710.
  • Bessey, C., Jarman, S. N., Berry, O., Olsen, Y. S., Bunce, M., Simpson, T., . . . Keesing, J. (2020). Maximizing fish detection with eDNA metabarcoding. Environmental DNA, 2(4), 493-504.
  • Deering, K.E., Devine, A., O’Sullivan, T.A., Lo, J., Boyce, M.C., Christophersen, C.T. (2020). Characterizing the composition of the pediatric gut microbiome: A systematic review. Nutrients, 12 (16). DOI:10.3390/nu12010016
  • DiBattista, J. D., Reimer, J. D., Stat, M., Masucci, G. D., Biondi, P., De Brauwer, M., . . . Bunce, M. (2020). Environmental DNA can act as a biodiversity barometer of anthropogenic pressures in coastal ecosystems. Scientific Reports, 10(1), 1-15.
  • Durack, J., Christophersen, C.T. (2020). Human respiratory and gut microbiomes – do they really contribute to respiratory health? Frontiers in Pediatrics (Review), 8. DOI:10.3389/fped.2020.00528
  • Gakuhari, T., Nakagome, S., Rasmussen, S., Allentoft, M. E., Sato, T., Korneliussen, T., . . . Oota, H. (2020). Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations. Communications biology, 3(1), 1-10.
  • Gatej, S.M., Bright, R., Weyrich, L.S., Marino, V., Christophersen, C.T., Gibson, R.J., Gully, N., Zilm, P. and Bartold, P.M. (2020). Probiotic Lactobacillus Rhamnosus GG Protects Against P. Gingivalis And F. Nucleatum Gut Dysbiosis. Journal of the International Academy of Periodontology. 22(2), 18-27.
  • Grealy, A., McDowell, M., Retallick, C., Bunce, M., & Peacock, D. (2020). Novel mitochondrial haplotype of spotted-tailed quoll (Dasyurus maculatus) present on Kangaroo Island (South Australia) prior to extirpation. The Holocene, 30(1), 136-144.
  • Grosse, C.S.J., Christophersen, C.T., Devine A., & Lawrance, I.C. (2020): The role of a plant-based diet in the pathogenesis, etiology and management of the inflammatory bowel diseases. Expert Review of Gastroenterology & Hepatology. 14(3), 137-145. DOI: 10.1080/17474124.2020.1733413
  • Hart, M. M., Cross, A. T., D’Agui, H. M., Dixon, K. W., Van der Heyde, M., Mickan, B., … & Nevill, P. (2020). Examining assumptions of soil microbial ecology in the monitoring of ecological restoration. Ecological Solutions and Evidence, 1(2), e12031.
  • Hoban, C. L., Musgrave, I. F., Byard, R. W., Nash, C., Farrington, R., Maker, G., . . . Coghlan, M. (2020). Combined liquid Chromatography-mass Spectrometry and Next-generation DNA sequencing detection of adulterants and contaminants in analgesic and Anti-inflammatory herbal Medicines. Pharmaceutical Medicine, 34(1), 49-61.
  • Huhn, M., Madduppa, H.H., Khair, M., Sabrian, A., Irawati, Y., Anggraini, N.P., Wilkinson, S.P., Simpson, T., Iwasaki, K., Setiamarga, D.H.E., Dias, P.J. (2020). Keeping up with introduced marine species at a remote biodiversity hotspot: awareness, training and collaboration across different sectors is key. Biological Invasions, 22, 749-771
  • Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., . . . Willerslev, E. (2020). Population genomics of the Viking world. Nature, 585(7825), 390-396.
  • McLean, D. L., Parsons, M. J., Gates, A. R., Benfield, M. C., Bond, T., Booth, D. J., . . . Jones, D. O. B. (2020). Enhancing the scientific value of industry remotely operated vehicles (ROVs) in our oceans. Frontiers in Marine Science, 7, 220.
  • Michael, P. J., Jones, D., White, N., Hane, J. K., Bunce, M., & Gibberd, M. (2020). Crop-zone weed mycobiomes of the south-western Australian grain belt. Frontiers in microbiology, 11.
  • Mühlemann, B., Vinner, L., Margaryan, A., Wilhelmson, H., de la Fuente Castro, C., Allentoft, M. E., . . . Sikora, M. (2020). Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age. Science, 369(6502).
  • Nester, G. M., De Brauwer, M., Koziol, A., West, K. M., DiBattista, J. D., White, N. E., . . . Bunce, M. (2020). Development and evaluation of fish eDNA metabarcoding assays facilitate the detection of cryptic seahorse taxa (family: Syngnathidae). Environmental DNA, 2(4), 614-626.
  • Nevill, P. G., Zhong, X., Tonti-Filippini, J., Byrne, M., Hislop, M., Thiele, K., … & Small, I. (2020). Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics. BMC Plant Methods, 16(1), 1-8.
  • Preston, S., & Richards, Z. (2020). Biological consequences of an outbreak of growth anomalies on Isopora palifera at the Cocos (Keeling) Islands. Coral Reefs, 1-13.
  • Ran,Y., Murphy, M., Genoni, A., Marlow, E., Dunican, IC., Lo, J., Andrew, L., Devine, A., Christophersen, C.T. (2020). Does Fibre-fix provided to people with irritable bowel syndrome who are consuming a low FODMAP diet improve their gut health, gut microbiome, sleep and mental health? A double-blinded, randomised controlled trial. BMJ Open Gastroenterology, 7(1), e000448. DOI:http://dx.doi.org/10.1136/bmjgast-2020-000448
  • Rayner, M. J., Van Loenen, A. L., Shepherd, L. D., Cubrinovska, I., Scofield, R. P., Tennyson, A. J., . . . Steeves, T. E (2020). Comprehensive evidence for subspecies designations in Cook’s Petrel Pterodroma cookii with implications for conservation management. Bird Conservation International, 1-13.
  • Rees, J., Christophersen, C.T., Lewis, J.R., Lo, J., Sambell, R., Costello, L., Walker, C., Byrne, M.F., Boyce, M.C., Newton, R.U., and Devine, A. (2020). The study protocol for a pseudo-randomised pre-post designed controlled intervention trial to study the effects of a 7-week cooking program on self-efficacy and biomarkers of health: the ECU lifestyle and biomarkers get connected study (ECULABJMOF) including the Jamie’s Ministry of Food WA participant experience. BMC Public Health, 20(1), 1-13. DOI: https://doi.org/10.1186/s12889-020-09124-3
  • Richards, Z. T., Haines, L., Scaps, P., & Ader, D. (2020). New Records of Heliopora hiberniana from SE Asia and the Central Indian Ocean. Diversity, 12(9), 328.
  • Richards, Z. T., Carvajal, J. I., Wallace, C. C., & Wilson, N. G. (2020). Phylotranscriptomics confirms Alveopora is sister to Montipora within the family Acroporidae. Marine genomics, 50, 100703.
  • Saccò, M., Blyth, A.J., Humphreys, W.F., Middleton, J.A., White, N.E., Campbell, M., Mousavi-Derazmahalleh, M., Laini, A., Hua, Q., Meredith, K., Cooper, S.J.B., Griebler, C., Grierson, P., Grice, K. (2020). Tracking down carbon inputs underground from an arid zone Australian calcrete. PLOS ONE.
  • Saccò, M., Blyth, A. J., Humphreys, W. F., Cooper, S. J., Austin, A. D., Hyde, J., . . . Grice, K. (2020). Refining trophic dynamics through multi‐factor Bayesian mixing models: A case study of subterranean beetles. Ecology and evolution, 10(16), 8815-8826.
  • Seersholm, F. V., Werndly, D. J., Grealy, A., Johnson, T., Early, E. M. K., Lundelius, E. L., . . . Bunce, M. (2020). Rapid range shifts and megafaunal extinctions associated with late Pleistocene climate change. Nature Communications, 11(1), 1-10.
  • Sjögren, K.-G., Olalde, I., Carver, S., Allentoft, M. E., Knowles, T., Kroonen, G., . . . Heyd, V. (2020). Kinship and social organization in Copper Age Europe. A cross-disciplinary analysis of archaeology, DNA, isotopes, and anthropology from two Bell Beaker cemeteries. PLoS One, 15(11), e0241278.
  • Seersholm, F. V., Werndly, D. J., Grealy, A., Johnson, T., Early, E. M. K., Lundelius, E. L., . . . Hansen, A. J. (2020). Rapid range shifts and megafaunal extinctions associated with late Pleistocene climate change. Nature Communications, 11(1), 1-10.
  • Takahashi, M., DiBattista, J. D., Jarman, S., Newman, S. J., Wakefield, C. B., Harvey, E. S., & Bunce, M. (2020). Partitioning of diet between species and life history stages of sympatric and cryptic snappers (Lutjanidae) based on DNA metabarcoding. Scientific Reports, 10(1), 4319.
  • Thomas, L., Underwood, J. N., Adam, A. A., Richards, Z. T., Dugal, L., Miller, K. J., & Gilmour, J. P. (2020). Contrasting patterns of genetic connectivity in brooding and spawning corals across a remote atoll system in northwest Australia. Coral Reefs, 39(1), 55-60.
  • Underwood, J.N., Richards, Z., Berry, O., Oades, D., Howard, A., Gilmour, J.P. (2020). Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote northwest Australia. Evolutionary Applications, DOI: 10.1111/eva.13033
  • Valliere, J. M., Wong, W. S., Nevill, P. G., Zhong, H., & Dixon, K. W. (2020). Preparing for the worst: Utilizing stress‐tolerant soil microbial communities to aid ecological restoration in the Anthropocene. Ecological Solutions and Evidence, 1(2), e12027.
  • van der Heyde, M., Bunce, M., Dixon, K., Wardell-Johnson, G., White, N.E. and Nevill, P., 2020. Changes in soil microbial communities in post mine ecological restoration: Implications for monitoring using high throughput DNA sequencing. Science of The Total Environment, p.142262.
  • van der Heyde, M., Bunce M., Wardell-Johnson G., Fernandes K., White N.E., Nevill, P. (2020). Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA (eDNA) metabarcoding. Molecular Ecology Resources. 20(3).
  • Walters, S. J., Robinson, T. P., Byrne, M., Wardell‐Johnson, G. W., & Nevill, P. (2020). Contrasting patterns of local adaptation along climatic gradients between a sympatric parasitic and autotrophic tree species. Molecular Ecology, 29(16), 3022-3037.
  • Wepfer, P. H., Nakajima, Y., Sutthacheep, M., Radice, V. Z., Richards, Z., Ang, P., … & Mikheyev, A. S. (2020). Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean. Molecular Phylogenetics and Evolution, 151, 106905.
  • West, K.M., Stat, M., Harvey, E.S., Skepper, C.L., DiBattista, J.D., Richards, Z.T., Travers, M.J., Newman, S.J., Bunce, M. (2020). eDNA metabarcoding survey reveals fine-scale coral reef community variation across a remote, tropical island ecosystem. Molecular Ecology
  • West, K. M., Richards, Z. T., Harvey, E. S., Susac, R., Grealy, A., & Bunce, M. (2020). Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia. Scientific Reports, 10(1), 1-15.
  • White, N.E., Guzik, M.T., Austin, A.D., Moore, G.I., Humphreys, W.F., Alexander, J., Bunce, M. (2020). Detection of the rare Australian endemic blind cave eel (Ophisternon candidum) with environmental DNA: implications for threatened species management in subterranean environments. Hydrobiologia, Vol.847(15), p.3201-3211.

2019

  • Adams C.I., Knapp, M., Gemmell, N.J., Jeunen, G.J., Bunce, M., Lamare, M.D., Taylor, H.R. (2019). Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool? Genes. Mar;10(3):192.
  • Alexander, J.B., Bunce, M., White, N., Wilkinson, S.P., Adam, A.A.S., Berry, T., Stat, M., Thomas, L., Newman, S.J., Dugal, L., Richards, Z.T. (2019). Development of a multi-assay approach for monitoring coral diversity using eDNA metabarcoding. Coral Reefs. Nov 22:1-3.
  • Anderson, B., Thiele, K., Grierson, P., Krauss, S., Nevill, PG., & Small, I., Zhong, X., & Barrett, M. (2019). Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing. AoB PLANTS, 11, https://doi.org/10.1093/aobpla/plz017.
  • Antonosyan, M., Seersholm, F. V., Grealy, A. C., Barham, M., Werndly, D., Margaryan, A., . . . Bunce, M. (2019). Ancient DNA shows high faunal diversity in the Lesser Caucasus during the Late Pleistocene. Quaternary Science Reviews, 219, 102-111.
  • Berry, T.E., Saunders, B.J., Coghlan, M.L., Stat, M., Jarman, S., Richardson, A.J., Davies, C.H., Berry, O., Harvey, E.S., Bunce, M. (2019). Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events. PLoS genetics. Feb 8;15(2):e1007943.
  • Berry, O., Richards, Z., Moore, G., Hernawan, U., Travers, M., & Gruber, B. (2019). Oceanic and coastal populations of a harvested macroinvertebrate Rochia nilotica in north-western Australia are isolated and may be locally adapted. Marine and Freshwater Research.
  • Bessey, C., Jarman, S.N., Stat, M., Rohner, C.A., Bunce, M., Koziol, A., Power, M., Rambahiniarison, J.M., Ponzo, A., Richardson, A.J., Berry, O. (2019). DNA metabarcoding assays reveal a diverse prey assemblage for Mobula rays in the Bohol Sea, Philippines. Ecology and evolution. Mar;9(5):2459-74.
  • Boast, A. P., Chapman, B., Herrera, M. B., Worthy, T. H., Scofield, R. P., Tennyson, A. J., . . . Mitchell, K. J. (2019). Mitochondrial genomes from New Zealand’s extinct Adzebills (Aves: Aptornithidae: Aptornis) support a sister-taxon relationship with the Afro-Madagascan Sarothruridae. Diversity, 11(2), 24.
  • Bohu, T., Anand, R., Noble, R., Lintern, M., Kaksonen, A. H., Mei, Y., . . . Bunce, M. (2019). Evidence for fungi and gold redox interaction under Earth surface conditions. Nature Communications, 10(1), 1-13.
  • Byrne, M., et al., (2019). Persistence and stochasticity are key determinants of genetic diversity in plants associated with banded iron formation inselbergs. Biological Reviews, 94, 753-772.
  • Claramunt, A.A., White, N.E., Bunce, M., O’Connell, M., Bullen, R., Mawson, P. (2019). Determination of the diet of the ghost bat (Macroderma gigas) in the Pilbara region of Western Australia from dried prey remains and DNA metabarcoding. Australian Journal of Zoology.
  • Crighton, E., Coghlan, M. L., Farrington, R., Hoban, C. L., Power, M. W., Nash, C., . . . Musgrave, I. F. (2019). Toxicological screening and DNA sequencing detects contamination and adulteration in regulated herbal medicines and supplements for diet, weight loss and cardiovascular health. Journal of pharmaceutical and biomedical analysis, 176, 112834.
  • Cross, A.T., Nevill, P.G., Dixon, K.W. and Aronson, J. (2019). Time for a paradigm shift toward a restorative culture. Restoration Ecology, 27(5), pp.924-928.
  • Crump, S. E., Miller, G. H., Power, M., Sepúlveda, J., Dildar, N., Coghlan, M., & Bunce, M. (2019). Arctic shrub colonization lagged peak postglacial warmth: Molecular evidence in lake sediment from Arctic Canada. Global change biology, 25(12), 4244-4256.
  • Darling, E. S., McClanahan, T. R., Maina, J., Gurney, G. G., Graham, N. A., Januchowski-Hartley, F., … & Puotinen, M. (2019). Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature ecology & evolution, 3(9), 1341-1350.
  • DiBattista, J.D., Reimer, J.D., Stat, M., Masucci, G.D., Biondi, P., De Brauwer, M., Bunce, M. (2019). Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient. PeerJ. Feb 6;7:e6379.
  • Fernandes, K., van der Heyde, M., Coghlan, M., Wardell‐Johnson, G., Bunce, M., Harris, R. and Nevill, P. (2019). Invertebrate DNA metabarcoding reveals changes in communities across mine site restoration chronosequences. Restoration Ecology, 27(5), pp.1177-1186.
  • Fromont, J., Richards, Z., & Wilson, N. (2019). First report of the coral-killing sponge Terpios hoshinota Ritzier and Muzik, 1993 in Western Australia: A new threat to Kimberley coral reefs? Diversity, 11(184), 1-9.
  • Funnekotter, AV., Millar, MA., Krauss, SL., & Nevill, PG. (2019). Phylogeographic analyses of Acacia karina (Fabaceae) support long term persistence of populations both on and off banded iron formations. Australian Journal of Botany, 67, 194-204.
  • Genoni, A., Christophersen, C.T., Lo, J., Coghlan, M., Boyce, M.C., Bird, A.R., Lyons-Wall P., and Devine, A. (2019) Longterm Paleolithic diet is associated with lower resistant starch intake, different gut microbiota composition and increased serum TMAO concentrations. European Journal of Nutrition. 59(5), 1845-1858. DOI: https://doi.org/10.1007/s00394-019-02036-y
  • Genoni, A., Lo, J., Lyons-Wall, P., Boyce, M.C., Christophersen, C.T., Bird, A., Devine, A. (2019). A Paleolithic diet lowers resistant starch intake but does not affect serum trimethylamine-N-oxide concentrations in healthy women. British Journal of Nutrition, 121 (3): 322-329. DOI:10.1017/S000711451800329X.
  • Gilmour, J., Cook, K., Ryan, N., Puotinen, M., Green, R., Shedrawi, G., … & Foster, T. (2019). The state of Western Australia’s coral reefs. Coral Reefs, 1-16.
  • Gopalsamy, G., Mortimer, E., Greenfield, P., Bird, A.R., Young G.P., and Christophersen C.T. (2019). Resistant Starch is Actively Fermented by Infant Faecal Microbiota and Increases Microbial Diversity. Nutrients, 11(6), 1345. DOI: https://doi.org/10.3390/nu11061345.
  • Grealy, A., Bunce, M., & Holleley, C. E. (2019). Avian mitochondrial genomes retrieved from museum eggshell. Molecular Ecology Resources, 19(4), 1052-1062.
  • Hammer, T.A., Zhong, X., Colas des Francs‐Small, C., Nevill, PG., Small, I.D. and Thiele, K.R., (2019). Resolving intergeneric relationships in the aervoid clade and the backbone of Ptilotus (Amaranthaceae): evidence from whole plastid genomes and morphology. Taxon, 68(2), pp.297-314.
  • Hart, M., Gorzelak, M.A., McAmmond, B.M., Van Hamme, J.D., Stevens, J., Abbott, L., Whiteley, A.S. and Nevill, P., (2019). Fungal Communities Resist Recovery in Sand Mine Restoration. Frontiers in Forests Global Change, 2, p.78.
  • Jeunen, G.J., Knapp, M., Spencer, H.G., Taylor, H.R., Lamare, M.D., Stat, M., Bunce, M., Gemmell, N.J. (2019). Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization. Ecology and evolution. Feb;9(3):1323-35.
  • Jeunen, G.J., Knapp, M., Spencer, H.G., Lamare, M.D., Taylor, H.R., Stat, M., Bunce, M., Gemmell, N.J. (2019). Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement. Molecular ecology resources. Mar;19(2):426-38.
  • Jeunen, G.J., Lamare, M.D., Knapp, M., Spencer, H.G., Taylor, H.R., Stat, M., Bunce, M., Gemmell, N.J. (2019). Water stratification in the marine biome restricts vertical environmental DNA (eDNA) signal dispersal. Environmental DNA
  • Khalil Suleiman, M., et al., (2019) Assessment of the Diversity of Fungal Community Composition Associated with Vachellia pachyceras and its Rhizosphere Soil from Kuwait Desert. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2019.00063.
  • Kirkendale, L., Hosie, A.M., Richards, Z. (2019). Defining biodiversity gaps for North West Shelf marine invertebrates. Journal of the Royal Society of Western Australia, 102, 1-9.
  • Knapp, M., Thomas, J. E., Haile, J., Prost, S., Ho, S. Y., Dussex, N., . . . Bunce, M. (2019). Mitogenomic evidence of close relationships between New Zealand’s extinct giant raptors and small-sized Australian sister-taxa. Molecular phylogenetics and evolution, 134, 122-128.
  • Koziol, A., Stat, M., Simpson, T., Jarman, S., DiBattista, J.D., Harvey, E.S., Marnane, M., McDonald, J., Bunce, M. (2019). Environmental DNA metabarcoding studies are critically affected by substrate selection. Molecular ecology resources. Mar;19(2):366-76.
  • Le, T.T., Shafaei, A., Genoni, A., Christophersen, C.T., Devine, A., Lo, J., Lyons-Wall, P., Boyce, M.C. (2019). Development and validation of a simple LC-MS/MS method for the simultaneous quantitative determination of trimethylamine N-oxide and the branched chain amino acids in human serum. Analytical and Bioanalytical Chemistry, 411(5):1019-1028. DOI: 10.1007/s00216-018-1522-8.
  • Moreira-Grez, B., Tam, K., Cross, A.T., Yong, J.W., Kumaresan, D., Nevill, PG., Farrell, M. and Whiteley, A.S., (2019). The Bacterial Microbiome Associated With Arid Biocrusts and the Biogeochemical Influence of Biocrusts Upon the Underlying Soil. Frontiers in Microbiology, 10, p.2143.
  • Nevill, PG., Howell, KA., Cross, AT., Williams, AV., Zhong, X., Tonti-Filippini, J., Boykin, LM., & Small, I. (2019). Plastome-wide rearrangements and gene losses in carnivorous Droseraceae, Genome Biology and Evolution, 11, 472–485. https://doi.org/10.1093/gbe/evz005.
  • Nevill, PG., Robinson, T., Di Virgilio, G., & Wardell-Johnson, G. (2019). Beyond isolation by distance: what best explains functional connectivity among populations of three sympatric plant species in an ancient terrestrial island system? Diversity and Distributions.
  • Newton, R., Christophersen, C.T., Fairman, C., Hart, N., Taaffe, D., Broadhurst, D., Devine, A., Chee, R., Tang, C., Spry, N., and Galvao, D. (2019). Does exercise impact gut microbiota composition in men receiving androgen deprivation therapy for prostate cancer? A single-blinded, two-armed, randomised controlled trial. BMJ Open, 9(4), e024872, DOI: http://dx.doi.org/10.1136/bmjopen-2018-024872.
  • Ng, S. H., Stat, M., Bunce, M., Simpson, S. J., & Simmons, L. W. (2019). Protein and carbohydrate intakes alter gut microbial community structure in crickets: a Geometric Framework approach. FEMS microbiology ecology, 95(8), fiz106.
  • Richards, Z.T., Garcia, R., Moore, G., Fromont, J., Kirkendale, L., Bryce, M., … & Whisson, C. (2019). A tropical Australian refuge for photosymbiotic benthic fauna. Coral Reefs, 38(4), 669-676.
  • Richards, Z., & Newman, S. J. (2019). Outbreak of growth anomalies in Isopora palifera at Cocos (Keeling) Islands. Marine Biodiversity, 49(3), 1071-1072.
  • Ritchie, AL., Dyer, RJ., Nevill, PG., Sinclair, EA., & Krauss, SL. (2019). Wide outcrossing provides functional connectivity for new and old Banksia populations within a fragmented landscape. Oecologia. https://doi.org/10.1007/s00442-019-04387-z.
  • Saccò, M., Blyth, A., Bateman, P.W., Hua, Q., Mazumder, D., White, N., Humphreys, W.F.,  Laini, A., Griebler, C., Grice, K. (2019). New light in the dark – a proposed multidisciplinary framework for studying functional ecology of groundwater fauna. Science of the Total Environment, Vol 660, 963-977.
  • Saccò, M., Blyth, A.J., Humphreys, W.F., Cooper, S., White, N.E., Campbell, M., Mousavi-Derazmahalleh, M., Hua, Q., Mazumder, D., Smith, C., Grice, K. (2019). What’s going on down (under) there? Unravelling biochemical flows under differential rainfall periods in a Western Australian calcrete. Australasian Groundwater Conference (AGC) 2019.
  • Sanchez-Puerta, MV., Edera, A., Gandini, CL., Williams, AV., Howell, K., Nevill, PG., & Small, I. (2019). Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae). Molecular Phylogenetics and Evolution, 132, 243250.
  • Stat, M., John, J., DiBattista, J.D., Newman, S.J., Bunce, M., Harvey, E.S. (2019). Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity. Conservation biology. Feb;33(1):196-205.
  • Suleiman, MK., et al., (2019). Evaluating the diversity and composition of bacterial communities associated with Acacia gerrardii-the only existing native tree species in Kuwait desert. Canadian Journal of Microbiology, 65, 235-251. doi: 10.1139/cjm-2018-0421.
  • Swift, J. A., Bunce, M., Dortch, J., Douglass, K., Faith, J. T., Fellows Yates, J. A., . . . Johnson, C. N. (2019). Micro methods for megafauna: novel approaches to late quaternary extinctions and their contributions to faunal conservation in the anthropocene. BioScience, 69(11), 877-887.
  • Wang, Y., Mortimer, E.K., Katundu, K. G.H., Kalanga, N., Leong, L. E.X., Gopalsamy, G.L., Christophersen, C.T., Richard, A.C., Shivasami, A., Abell, G. C.J., Young, G.P., and Rogers G.B. (2019). The capacity of the faecal microbiota from Malawian infants to ferment resistant starch. Frontiers in Microbiology. , 10, 1459. DOI: https://doi.org/10.3389/fmicb.2019.01459

2018

  • DiBattista, J. D., Wakefield, C. B., Moore, G. I., Bunce, M., Williams, A. J., O’Malley, J. M., . . . Green, M. A. (2018). Genomic and life-history discontinuity reveals a precinctive lineage for a deep-water grouper with gene flow from tropical to temperate waters on the west coast of Australia. Ecological Genetics and Genomics, 9, 23-33.
  • Dormontt, EE., Van Dijk, KJ., Bell, KL., Biffin, E., Breed, MF., Byrne, M., Caddy-Retalic, S., Encinas-Viso, F., Nevill, PG., Shapcott, A. & Young, JM. (2018). Advancing DNA metabarcoding applications for plants requires systematic analysis of herbarium collectionsan Australian perspective. Frontiers in Ecology and Evolution, 6, 134.
  • Douglass, K., Antonites, A. R., Morales, E. M. Q., Grealy, A., Bunce, M., Bruwer, C., & Gough, C. (2018). Multi-analytical approach to zooarchaeological assemblages elucidates Late Holocene coastal lifeways in southwest Madagascar. Quaternary International, 471, 111-131.
  • Fernandes, K., van der Heyde, M., Bunce, M., Dixon, K., Harris, R.J., Wardell‐Johnson, G., Nevill, P.G. (2018). DNA metabarcoding-a new approach to fauna monitoring in mine site restoration. Restoration ecology. Nov;26(6):1098-107.
  • Hoban, C. L., Musgrave, I. F., Coghlan, M. L., Power, M. W., Byard, R. W., Nash, C., . . . Trengove, R. (2018). Adulterants and contaminants in psychotropic herbal medicines detected with mass spectrometry and next-generation DNA sequencing. Pharmaceutical Medicine, 32(6), 429-444.
  • Jarman, S.N., Berry, O., Bunce, M. (2018) The value of environmental DNA biobanking for long-term biomonitoring. Nature ecology & evolution. Aug;2(8):1192.
  • Jones, J., DiBattista, J. D., Stat, M., Bunce, M., Boyce, M. C., Fairclough, D. V., . . . Huggett, M. J. (2018). The microbiome of the gastrointestinal tract of a range-shifting marine herbivorous fish. Frontiers in microbiology, 9, 2000. 
  • Mendoza, M. L. Z., Xiong, Z., Escalera-Zamudio, M., Runge, A. K., Thézé, J., Streicker, D., . . . Ryder, O. A. (2018). Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nature ecology & evolution, 2(4), 659-668.
  • Ng, S. H., Stat, M., Bunce, M., & Simmons, L. W. (2018). The influence of diet and environment on the gut microbial community of field crickets. Ecology and evolution, 8(9), 4704-4720.
  • Rey‐Iglesia, A., Gopalakrishan, S., Carøe, C., Alquezar‐Planas, D. E., Ahlmann Nielsen, A., Röder, T., . . . Fredensborg Rath, M. (2018). MobiSeq: De novo SNP discovery in model and non‐model species through sequencing the flanking region of transposable elements. Molecular Ecology Resources, 19(2), 512-525.
  • Richards, Z.T., Yasuda, N., Kikuchi, T., Foster, T., Mitsuyuki, C., Stat, M., … & Wilson, N. G. (2018). Integrated evidence reveals a new species in the ancient blue coral genus Heliopora (Octocorallia). NatSR, 8, 15875.
  • Richards, Z., Bryce, M., & Bryce, C. (2018). The composition and structure of shallow benthic reef communities in the Kimberley, north-west Australia. Records of the Western Australian Museum Supplement, 85, 103.
  • Richards, Z.T., & Day, J.C. (2018). Biodiversity of the Great Barrier Reef—how adequately is it protected? PeerJ, 6, e4747.
  • Schnell, I. B., Bohmann, K., Schultze, S. E., Richter, S. R., Murray, D. C., Sinding, M. H. S., . . . Dolch, R. (2018). Debugging diversity–a pan‐continental exploration of the potential of terrestrial blood‐feeding leeches as a vertebrate monitoring tool. Molecular Ecology Resources, 18(6), 1282-1298.
  • Seersholm, F. V., Cole, T. L., Grealy, A., Rawlence, N. J., Greig, K., Knapp, M., . . . Shepherd, L. (2018). Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey. Proceedings of the National Academy of Sciences, 115(30), 7771-7776.
  • Turpin, J.M., White, N.E., Dunlop, J.A., & Bamford, M.J. (2018). New populations of the black-flanked rock-wallaby (Petrogale lateralis) from the Little Sandy Desert and Murchison, Western Australia. Australian Mammalogy, 40(2), 234-242. doi:10.1071/AM14043.
  • Underwood, J.N., Richards, Z.T., Miller, K.J., Puotinen, M.L., & Gilmour, J.P. (2018). Genetic signatures through space, time and multiple disturbances in a ubiquitous brooding coral. Molecular ecology.
  • Zinke, J., Gilmour, J.P., Fisher, R., Puotinen, M., Maina, J., Darling, E. … & Hobbs, J.P.A. (2018). Gradients of disturbance, environmental conditions and coral community. Biodiversity research

2017

  • Berry, T.E., Osterrieder, S.K., Murray, D.C., Coghlan, M.L., Richardson, A.J., Grealy, A.K., Stat, M., Bejder, L., Bunce, M. (2017). DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea). Ecology and Evolution. Jul;7(14):5435-53.
  • Byard, R. W., Musgrave, I., Maker, G., & Bunce, M. (2017). What risks do herbal products pose to the Australian community? Medical Journal of Australia, 206(2), 86-90.
  • Clark, A.L., King, C.L., Buckley, H., Collins, C., Dhavale, N., Elliot, G., … & West, K. (2017). Biological Anthropology in the Indo-Pacific Region: New Approaches to Age-Old Questions. Journal of Indo-Pacific Archaeology, 41, 78-94.
  • DiBattista, J.D., Coker, D.J., Sinclair-Taylor, T.H., Stat, M., Berumen, M.L., Bunce M. (2017). Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea. Coral Reefs. Dec 1;36(4):1245-52.
  • Grealy, A., Phillips, M., Miller, G., Gilbert, M. T. P., Rouillard, J.-M., Lambert, D., . . . Haile, J. (2017). Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell. Molecular phylogenetics and evolution, 109, 151-163.
  • Grealy, A., Rawlence, N. J., & Bunce, M. (2017). Time to spread your wings: a review of the avian ancient DNA field. Genes, 8(7), 184.
  • Hardy, N., Berry, T., Kelaher, B.P., Goldsworthy, S.D., Bunce, M., Coleman, M.A., Gillanders, B.M., Connell, S.D., Blewitt, M., Figueira, W. (2017). Assessing the trophic ecology of top predators across a recolonisation frontier using DNA metabarcoding of diets. Marine Ecology Progress Series. Jun 21;573:237-54.
  • Rosser, N.L., Thomas, L., Stankowski, S., Richards, Z.T., Kennington, W.J., & Johnson, M.S. (2017). Phylogenomics provides new insight into evolutionary relationships and genealogical discordance in the reef-building coral genus Acropora. Proceedings of the Royal Society B: Biological Sciences, 284(1846).
  • Stat, M., Huggett, M.J., Bernasconi, R., DiBattista, J.D., Berry, T.E., Newman, S.J., Harvey, E.S., Bunce, M. (2017). Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment. Scientific Reports. Sep 25;7(1):12240.
  • Tridico, S. R., Murray, D. C., Bunce, M., & Kirkbride, K. P. (2017). DNA profiling of bacteria from human hair: Potential and pitfalls. Forensic Microbiology, 358. 
  • West, K., Collins, C., Kardailsky, O., Kahn, J., Hunt, T. L., Burley, D., & Matisoo-Smith, E. (2017). The Pacific rat race to Easter Island: tracking the prehistoric dispersal of Rattus exulans using ancient mitochondrial genomes. Frontiers in Ecology and Evolution, 5, 52.